FINDLOG: search near file: ../data/ladcp/r0078_02.rbb
 READSERIAL_WH: parse file ../data/ladcp/r0078_02.log
 Can not find RDI serial number 
 down looking serial number is : NaN
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../data/ladcp/r0078_02.rbb
ISBB: BB-data 
 raw data has 432+2 bytes per ensemble
 DETCTED BEAM coordinates try to make earth coordinates!
 begin to convert 10663 profiles from beam to earth
 read 10663 ensemble and 16 bins 
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 757 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 541 finite bottom velocities
 removed 0 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 1 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 5356 bins down looking
==> load data took 141 seconds
load NAV time series ../ladcp_output/A16N_nav.mat
 number of NAV scans: 437404  delta t : 10 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:26°N 59.9842'   25°W  3.8209'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:27°N  0.0023'   25°W  3.8390'
LOADCTDPROF: load CTD profile ../ladcp/ctd/prelim_ctd/rh203w0782.ctd
 CTD max depth : 5230
LOADCTD: load CTD time series ../ladcp/ctd/sio_ascts/078.02
 number of CTD scans: 8912  delta t : 1.5 seconds
 Adjusted CTD Time by -0.22383 minutes
 max CTD pressure 5330 at 18-Jul-2003 18:11:04
 max LADCP depth 5158 at 18-Jul-2003 18:13:04
WARNING WARNING 
 bottom time difference between CTD/LADCP is 2 minute
 Changed Start Time : 18-Jul-2003 16:36:04  to 18-Jul-2003 16:43:12
 Changed End   Time : 18-Jul-2003 20:27:05  to 18-Jul-2003 20:17:17
 CTD max depth : 5230
 best lag : -40 pings ~ -52 seconds  corr:0.99265
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :5230.2456
 should be                   :5230.2456
Warning: Polynomial is badly conditioned. Remove repeated data points
         or try centering and scaling as described in HELP POLYFIT.
> In /usr/local/matlab61/toolbox/matlab/polyfun/polyfit.m at line 74
  In /home/felixt/ladcp/m/getdpthi.m at line 310
  In /home/felixt/ladcp/m/laproc.m at line 75
  In /g1/felixt/A16N/scripts/runme.m at line 127
  bottom found at 5235 +/- 4 m
 removing 235 values below bottom
==> get depth took 90 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 10 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 684 bins down looking
 reduced ensemble size is 881
LOADSADCP: load SADCP data file ../sadcp/00644v3.nc
 found 4 SADCP profiles 
==> prep inversion took 81 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0046711 [m/s]
 super ensemble velocity error 0.011403 [m/s]
 set velocity error to:0.019747 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 8 ill constrained elements
 smooth CTD velocity profile
 found 6 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.79119
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.1777
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 4.2275
 weight for drag is (ps.dragfac) 0.19787
 ready for inversion  length of d : 8137
           (CTD vel)  length of A1:881
         (ocean vel)  length of A2:521
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 9 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 8 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 353 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 81 % of data 
 increased error because of shear - inverse difference
 compute vertical diffusivity
 use dz:640 m long segments
 save results