FINDLOG: search near file: ../data/ladcp/r0109_01.rbb
 READSERIAL_WH: parse file ../data/ladcp/r0109_01.log
 Can not find RDI serial number 
 down looking serial number is : NaN
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../data/ladcp/r0109_01.rbb
ISBB: BB-data 
 raw data has 752+2 bytes per ensemble
 DETCTED BEAM coordinates try to make earth coordinates!
 begin to convert 12274 profiles from beam to earth
 read 12274 ensemble and 32 bins 
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 862 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 795 finite bottom velocities
 removed 2 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 7 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 10262 bins down looking
==> load data took 233 seconds
load NAV time series ../ladcp_output/A16N_nav.mat
 number of NAV scans: 437404  delta t : 10 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:11°N 31.8322'   29°W  0.0155'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:11°N 29.9331'   28°W 59.9012'
LOADCTDPROF: load CTD profile ../ladcp/ctd/prelim_ctd/rh203w1091.ctd
 CTD max depth : 5906
LOADCTD: load CTD time series ../ladcp/ctd/sio_ascts/109.01
 number of CTD scans: 29369  delta t : 0.50002 seconds
 Adjusted CTD Time by 13.9817 minutes
 max CTD pressure 6023 at 28-Jul-2003 14:00:44
 max LADCP depth 5826 at 28-Jul-2003 14:01:47
WARNING WARNING 
 bottom time difference between CTD/LADCP is 1 minute
 Changed Start Time : 28-Jul-2003 11:59:37  to 28-Jul-2003 12:17:55
 Changed End   Time : 28-Jul-2003 16:25:31  to 28-Jul-2003 16:16:46
 CTD max depth : 5906
 best lag : -33 pings ~ -43 seconds  corr:0.99356
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :5906.152
 should be                   :5906.152
Warning: Polynomial is badly conditioned. Remove repeated data points
         or try centering and scaling as described in HELP POLYFIT.
> In /usr/local/matlab61/toolbox/matlab/polyfun/polyfit.m at line 74
  In /home/felixt/ladcp/m/getdpthi.m at line 310
  In /home/felixt/ladcp/m/laproc.m at line 75
  In /g1/felixt/A16N/scripts/runme.m at line 127
  bottom found at 5925 +/- 2 m
 removing 1648 values below bottom
==> get depth took 466 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 10 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 1835 bins down looking
 reduced ensemble size is 985
LOADSADCP: load SADCP data file ../sadcp/00644v3.nc
 found 4 SADCP profiles 
==> prep inversion took 138 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0041867 [m/s]
 super ensemble velocity error 0.010433 [m/s]
 set velocity error to:0.022262 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 6 ill constrained elements
 smooth CTD velocity profile
 found 4 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.74129
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.43227
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 5.3172
 weight for drag is (ps.dragfac) 0.19891
 ready for inversion  length of d : 20458
           (CTD vel)  length of A1:985
         (ocean vel)  length of A2:591
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 11 ill constrained elements
 smooth CTD velocity profile
 found 1 ill constrained elements
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 6 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 500 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 96 % of data 
 increased error because of shear - inverse difference
 compute vertical diffusivity
 use dz:640 m long segments
 save results