FINDLOG: search near file: ../data/ladcp/r0116_02.rbb
 READSERIAL_WH: parse file ../data/ladcp/r0116_02.log
 Can not find RDI serial number 
 down looking serial number is : NaN
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../data/ladcp/r0116_02.rbb
ISBB: BB-data 
 raw data has 752+2 bytes per ensemble
 DETCTED BEAM coordinates try to make earth coordinates!
 begin to convert 10478 profiles from beam to earth
 read 10478 ensemble and 32 bins 
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 1637 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 838 finite bottom velocities
 removed 0 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 3 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 8014 bins down looking
==> load data took 190 seconds
load NAV time series ../ladcp_output/A16N_nav.mat
 number of NAV scans: 437404  delta t : 10 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to: 7°N 59.9893'   27°W 30.0511'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to: 7°N 59.9550'   27°W 29.9706'
LOADCTDPROF: load CTD profile ../ladcp/ctd/prelim_ctd/rh203w1162.ctd
 CTD max depth : 5072
LOADCTD: load CTD time series ../ladcp/ctd/sio_ascts/116.02
 number of CTD scans: 25623  delta t : 0.50002 seconds
 Adjusted CTD Time by 5.9842 minutes
 max CTD pressure 5162 at 31-Jul-2003 00:37:17
 max LADCP depth 5020 at 31-Jul-2003 00:38:37
WARNING WARNING 
 bottom time difference between CTD/LADCP is 1 minute
 Changed Start Time : 30-Jul-2003 22:56:16  to 30-Jul-2003 23:10:15
 Changed End   Time : 31-Jul-2003 02:43:16  to 31-Jul-2003 02:32:54
 CTD max depth : 5072
 best lag : -21 pings ~ -27 seconds  corr:0.99729
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :5072.4498
 should be                   :5072.4498
Warning: Polynomial is badly conditioned. Remove repeated data points
         or try centering and scaling as described in HELP POLYFIT.
> In /usr/local/matlab61/toolbox/matlab/polyfun/polyfit.m at line 74
  In /home/felixt/ladcp/m/getdpthi.m at line 310
  In /home/felixt/ladcp/m/laproc.m at line 75
  In /g1/felixt/A16N/scripts/runme.m at line 127
  bottom found at 5079 +/- 2 m
 removing 792 values below bottom
==> get depth took 313 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 10 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 1544 bins down looking
 reduced ensemble size is 848
LOADSADCP: load SADCP data file ../sadcp/00644v3.nc
 found 3 SADCP profiles 
==> prep inversion took 110 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0049346 [m/s]
 super ensemble velocity error 0.01002 [m/s]
 set velocity error to:0.021091 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 10 ill constrained elements
 smooth CTD velocity profile
 found 6 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.69374
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.45974
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 4.2742
 weight for drag is (ps.dragfac) 0.19751
 ready for inversion  length of d : 18964
           (CTD vel)  length of A1:848
         (ocean vel)  length of A2:506
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 11 ill constrained elements
 smooth CTD velocity profile
 found 2 ill constrained elements
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 10 ill constrained elements
 smooth CTD velocity profile
 found 1 ill constrained elements
Cholesky transform
==> inversion took 358 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 97 % of data 
 compute vertical diffusivity
 use dz:640 m long segments
 save results