FINDLOG: search near file: ../k004d/K004D000.000
 READSERIAL_WH: parse file ../k004d/K004D000.LOG
 down looking serial number is : 3898
 FINDLOG: search near file: ../k004u/K004U000.000
 READSERIAL_WH: parse file ../k004u/K004U000.LOG
   up looking serial number is : 754
LOADRDI: Loading data
 loading down-data ../k004d/K004D000.000
ISBB: BB-data 
 raw data has 733+2 bytes per ensemble
 WARNING  found 11 ensembles with bad checksum 
 read 545 ensemble and 25 bins 
 using RDI bottom track
 removed 0 values because of low percent good
 loading up-data ../k004u/K004U000.000
 raw data has 653+2 bytes per ensemble
 WARNING  found 12 ensembles with bad checksum 
 read 550 ensemble and 21 bins 
 removed 0 values because of low percent good
 try to shift timeseries by lag: -1 correlation: 0.91642
 shift ADCP timeseries by -1 ensembles
 number of joint ensembles is : 545
 found 307 finite bottom velocities
 found 1 NaN bottom error velocities and discarded them
 removed 659 values because of high error velocity
 removed 1 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 8 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 537 bins down looking
 Outlier discarded 143 bins up looking
==> load data took 6 seconds
LOADNAV: load NAV time series ../ctdnav/00401.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadnav.m at line 33
  In /home/felixt/ladcp/m/laproc.m at line 43
  In /home/felixt/A20/scripts/runme.m at line 85
 number of NAV scans: 2413  delta t : 0.43198 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:43°N  0.7332'   50°W 48.9756'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:43°N  0.9696'   50°W 49.1676'
LOADCTD: load CTD time series ../ctdnav/00401.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadctd.m at line 46
  In /home/felixt/ladcp/m/laproc.m at line 60
  In /home/felixt/A20/scripts/runme.m at line 85
 number of CTD scans: 2413  delta t : 0.43198 seconds
 max CTD pressure 142 at 26-Sep-2003 03:35:10
 max LADCP depth 137 at 26-Sep-2003 03:35:07
 Changed Start Time : 26-Sep-2003 03:21:06  to 26-Sep-2003 03:30:17
 Changed End   Time : 26-Sep-2003 03:52:38  to 26-Sep-2003 03:44:06
 CTD max depth : 140
 best lag : 1 pings ~ 4 seconds  corr:0.91699
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
 WARNING found 100% of  hbot=0  WARNING
 call own bottom track routine to get bottom
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 204 bottom track data from normal velocities
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :140.4632
 should be                   :140.4632
  bottom found at 153 +/- 1 m
 removing 660 values below bottom
==> get depth took 7 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 10 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 mean compass offset based on velocity is -30.0791 deg
 mean compass offset based on tilt is -32.456 deg
 rot up2down use mean up/down compass
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 13 bins down looking
 Outlier discarded 10 bins up looking
 reduced ensemble size is 21
 mean compass offset based on tilt is -32.456 deg
 remove first guess ocean velocity from raw data
 adjusted for velocity offset in up and down looking ADCP
 remove first guess ocean velocity from raw data
 rot up2down use mean up/down compass
 rotated earlier, use difference 
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 12 bins down looking
 Outlier discarded 11 bins up looking
 reduced ensemble size is 21
LOADSADCP: load SADCP data file ../sadcp/A20_sadcp.mat
 found 2 SADCP profiles 
==> prep inversion took 6 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.072376 [m/s]
 super ensemble velocity error 0.021705 [m/s]
 set velocity error to:0.048103 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 smooth CTD velocity profile
 bottom inversion 
 mean bottom track weight : 0.88242
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 1.2356
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 0.66463
 weight for drag is (ps.dragfac) 0.014023
 ready for inversion  length of d : 500
           (CTD vel)  length of A1:21
         (ocean vel)  length of A2:14
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 smooth CTD velocity profile
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 smooth CTD velocity profile
Cholesky transform
==> inversion took 1 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 80 % of data 
 compute vertical diffusivity
 use dz:640 m long segments
 save results