FINDLOG: search near file: ../k028d/K028D000.000
 READSERIAL_WH: parse file ../k028d/K028D000.LOG
 down looking serial number is : 754
 FINDLOG: search near file: ../k028u/K028U000.000
 READSERIAL_WH: parse file ../k028u/K028U000.LOG
   up looking serial number is : 149
LOADRDI: Loading data
 loading down-data ../k028d/K028D000.000
ISBB: BB-data 
 raw data has 733+2 bytes per ensemble
 read 4236 ensemble and 25 bins 
 using RDI bottom track
 removed 0 values because of low percent good
 loading up-data ../k028u/K028U000.000
 raw data has 653+2 bytes per ensemble
 read 4241 ensemble and 21 bins 
 removed 0 values because of low percent good
 try to shift timeseries by lag: -1 correlation: 0.99216
 shift ADCP timeseries by -1 ensembles
 number of joint ensembles is : 4236
 found 210 finite bottom velocities
 found 6 NaN bottom error velocities and discarded them
 removed 346 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 2 profiles due to larger tilt than 22
 removed 254 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
WARNING one beam might be weak !
  weak down looking beam 3
 Outlier discarded 4527 bins down looking
 Outlier discarded 1999 bins up looking
==> load data took 58 seconds
LOADNAV: load NAV time series ../ctdnav/02801.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadnav.m at line 33
  In /home/felixt/ladcp/m/laproc.m at line 43
  In /home/felixt/A20/scripts/runme.m at line 85
 number of NAV scans: 28334  delta t : 0.86397 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:33°N 32.2428'   52°W 21.1782'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:33°N 33.7908'   52°W 20.7204'
LOADCTD: load CTD time series ../ctdnav/02801.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadctd.m at line 46
  In /home/felixt/ladcp/m/laproc.m at line 60
  In /home/felixt/A20/scripts/runme.m at line 85
 number of CTD scans: 28334  delta t : 0.86397 seconds
 max CTD pressure 5629 at 02-Oct-2003 03:20:13
 max LADCP depth 5443 at 02-Oct-2003 03:20:44
WARNING WARNING 
 bottom time difference between CTD/LADCP is 1 minute
 Changed Start Time : 02-Oct-2003 01:34:17  to 02-Oct-2003 01:44:16
 Changed End   Time : 02-Oct-2003 05:44:13  to 02-Oct-2003 05:34:47
 CTD max depth : 5517
 best lag : 1 pings ~ 4 seconds  corr:0.96581
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 no surface reflections down-cast
 no surface reflections up-cast
 maximum depth from int W is :5517.1753
 should be                   :5517.1753
  bottom found at 5532 +/- 0 m
 removing 232 values below bottom
==> get depth took 774 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 10 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 mean compass offset based on velocity is 177.5053 deg
 mean compass offset based on tilt is -179.6133 deg
 rot up2down use mean up/down compass
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 964 bins down looking
 Outlier discarded 560 bins up looking
 reduced ensemble size is 757
 mean compass offset based on tilt is -179.6133 deg
 remove first guess ocean velocity from raw data
 adjusted for velocity offset in up and down looking ADCP
 remove first guess ocean velocity from raw data
 rot up2down use mean up/down compass
 rotated earlier, use difference 
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 932 bins down looking
 Outlier discarded 511 bins up looking
 reduced ensemble size is 757
LOADSADCP: load SADCP data file ../sadcp/A20_sadcp.mat
 found 16 SADCP profiles 
==> prep inversion took 169 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0043381 [m/s]
 super ensemble velocity error 0.014537 [m/s]
 set velocity error to:0.030491 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 1 ill constrained elements
 smooth CTD velocity profile
 bottom inversion 
 mean bottom track weight : 0.80269
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 1.046
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 7.0288
 weight for drag is (ps.dragfac) 0.1984
 ready for inversion  length of d : 14274
           (CTD vel)  length of A1:757
         (ocean vel)  length of A2:552
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 smooth CTD velocity profile
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 1 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 212 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 58 % of data 
 increased error because of shear - inverse difference
 compute vertical diffusivity
 use dz:640 m long segments
 save results