FINDLOG: search near file: ../k039/A0805001.612
 FINDLOG: give up
 FINDLOG: search near file: ../k039/A0805001.612
 READSERIAL_BB: parse file ../k039/K039
 down looking serial number is : 2612
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../k039/A0805001.612
ISBB: BB-data 
 raw data has 432+2 bytes per ensemble
 read 10726 ensemble and 16 bins 
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 421 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 409 finite bottom velocities
 removed 0 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 36 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 5040 bins down looking
==> load data took 121 seconds
LOADNAV: load NAV time series ../ctdnav/03901.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadnav.m at line 33
  In /home/felixt/ladcp/m/laproc.m at line 43
  In /home/felixt/A20/scripts/runme.m at line 85
 number of NAV scans: 26158  delta t : 0.86397 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:24°N 51.2754'   52°W 20.5434'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:24°N 52.8972'   52°W 19.3158'
LOADCTD: load CTD time series ../ctdnav/03901.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadctd.m at line 46
  In /home/felixt/ladcp/m/laproc.m at line 60
  In /home/felixt/A20/scripts/runme.m at line 85
 number of CTD scans: 26158  delta t : 0.86397 seconds
 max CTD pressure 5097 at 08-Oct-2003 03:24:14
 max LADCP depth 4962 at 08-Oct-2003 03:24:33
 Changed Start Time : 08-Oct-2003 01:41:34  to 08-Oct-2003 01:53:55
 Changed End   Time : 08-Oct-2003 05:33:56  to 08-Oct-2003 05:25:31
 CTD max depth : 5005
 best lag : 5 pings ~ 6 seconds  corr:0.98064
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :5004.8418
 should be                   :5004.8418
Warning: Polynomial is badly conditioned. Remove repeated data points
         or try centering and scaling as described in HELP POLYFIT.
> In /usr/local/matlab61/toolbox/matlab/polyfun/polyfit.m at line 74
  In /home/felixt/ladcp/m/getdpthi.m at line 330
  In /home/felixt/ladcp/m/laproc.m at line 75
  In /home/felixt/A20/scripts/runme.m at line 85
  bottom found at 5023 +/- 1 m
 removing 315 values below bottom
==> get depth took 735 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 16 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 497 bins down looking
 reduced ensemble size is 558
LOADSADCP: load SADCP data file ../sadcp/A20_sadcp.mat
 found 15 SADCP profiles 
==> prep inversion took 43 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0047259 [m/s]
 super ensemble velocity error 0.012356 [m/s]
 set velocity error to:0.020112 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 20 ill constrained elements
 smooth CTD velocity profile
 found 4 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.59531
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.57688
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 4.2557
 weight for drag is (ps.dragfac) 0.19734
 ready for inversion  length of d : 5033
           (CTD vel)  length of A1:558
         (ocean vel)  length of A2:500
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 54 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 52 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 102 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 72 % of data 
 increased error because of shear - inverse difference
 compute vertical diffusivity
 use dz:640 m long segments
 save results