FINDLOG: search near file: ../k047/A1017001.612
 FINDLOG: give up
 FINDLOG: search near file: ../k047/A1017001.612
 READSERIAL_BB: parse file ../k047/K047
 down looking serial number is : 2612
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../k047/A1017001.612
ISBB: BB-data 
 raw data has 432+2 bytes per ensemble
 read 11144 ensemble and 16 bins 
 using increased bottom echo amplitudes to create bottom track
Warning: Divide by zero.
> In /home/felixt/ladcp/m/localmax2.m at line 36
  In /home/felixt/ladcp/m/loadrdi.m (updown) at line 614
  In /home/felixt/ladcp/m/loadrdi.m at line 51
  In /home/felixt/ladcp/m/laproc.m at line 32
  In /home/felixt/A20/scripts/runme.m at line 85
 use bin below maximum for bottom track 
 created 439 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 427 finite bottom velocities
 removed 0 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 24 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 5164 bins down looking
==> load data took 129 seconds
LOADNAV: load NAV time series ../ctdnav/04701.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadnav.m at line 33
  In /home/felixt/ladcp/m/laproc.m at line 43
  In /home/felixt/A20/scripts/runme.m at line 85
 number of NAV scans: 27493  delta t : 0.43198 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:19°N 30.0456'   52°W 20.3472'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:19°N 32.2026'   52°W 19.9296'
LOADCTD: load CTD time series ../ctdnav/04701.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A20/scripts/loadctd.m at line 46
  In /home/felixt/ladcp/m/laproc.m at line 60
  In /home/felixt/A20/scripts/runme.m at line 85
 number of CTD scans: 27493  delta t : 0.43198 seconds
 max CTD pressure 5389 at 10-Oct-2003 15:22:34
 max LADCP depth 5223 at 10-Oct-2003 15:21:56
WARNING WARNING 
 bottom time difference between CTD/LADCP is -1 minute
 Changed Start Time : 10-Oct-2003 13:36:46  to 10-Oct-2003 13:44:55
 Changed End   Time : 10-Oct-2003 17:38:11  to 10-Oct-2003 17:29:31
 CTD max depth : 5290
 best lag : 9 pings ~ 12 seconds  corr:0.9867
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :5289.5071
 should be                   :5289.5071
Warning: Polynomial is badly conditioned. Remove repeated data points
         or try centering and scaling as described in HELP POLYFIT.
> In /usr/local/matlab61/toolbox/matlab/polyfun/polyfit.m at line 74
  In /home/felixt/ladcp/m/getdpthi.m at line 330
  In /home/felixt/ladcp/m/laproc.m at line 75
  In /home/felixt/A20/scripts/runme.m at line 85
  bottom found at 5301 +/- 2 m
 removing 191 values below bottom
==> get depth took 819 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 16 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 572 bins down looking
 reduced ensemble size is 590
LOADSADCP: load SADCP data file ../sadcp/A20_sadcp.mat
 found 16 SADCP profiles 
==> prep inversion took 49 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0044524 [m/s]
 super ensemble velocity error 0.012043 [m/s]
 set velocity error to:0.020838 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 13 ill constrained elements
 smooth CTD velocity profile
 found 2 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.7522
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.45744
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 4.6802
 weight for drag is (ps.dragfac) 0.19799
 ready for inversion  length of d : 6103
           (CTD vel)  length of A1:590
         (ocean vel)  length of A2:528
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 32 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 22 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 114 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 81 % of data 
 increased error because of shear - inverse difference
 compute vertical diffusivity
 use dz:640 m long segments
 save results