FINDLOG: search near file: ../K2001_082/k2018/A2808001.612
 FINDLOG: give up
 FINDLOG: search near file: ../K2001_082/k2018/A2808001.612
 READSERIAL_BB: parse file ../K2001_082/k2018/K2018
 down looking serial number is : 2612
   up looking serial number is : NaN
LOADRDI: Loading data
 loading down-data ../K2001_082/k2018/A2808001.612
ISBB: BB-data 
 raw data has 432+2 bytes per ensemble
 read 7562 ensemble and 16 bins 
 using increased bottom echo amplitudes to create bottom track
 use bin below maximum for bottom track 
 created 364 bottom track data from normal velocities
 removed 0 values because of low percent good
 found 361 finite bottom velocities
 removed 0 values because of high error velocity
 removed 0 bottom values because of high error velocity
 using whole profile since no start time was given
 removed 0 profiles due to larger tilt than 22
 removed 4 profiles due to larger tilt difference than 4
 multiply weight of bin 1 by 0.5
 Outlier discarded 3441 bins down looking
==> load data took 60 seconds
LOADNAV: load NAV time series ../A22ctdnav/01801.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A22/scripts/loadnav.m at line 33
  In /home/felixt/ladcp/m/laproc.m at line 43
  In /home/felixt/A22/scripts/runme.m at line 85
 number of NAV scans: 18183  delta t : 0.43198 seconds
 update start pos  from:NaN°N     NaN'  NaN°E     NaN'
                     to:17°N 29.5974'   66°W  0.1386'
 updated magnetic deviation and applied correction 
 update end pos    from:NaN°N     NaN'  NaN°E     NaN'
                     to:17°N 29.6550'   66°W  0.7368'
LOADCTD: load CTD time series ../A22ctdnav/01801.ctd
Warning: COLON arguments must be real scalars.
> In /home/felixt/A22/scripts/loadctd.m at line 46
  In /home/felixt/ladcp/m/laproc.m at line 60
  In /home/felixt/A22/scripts/runme.m at line 85
 number of CTD scans: 18183  delta t : 0.43198 seconds
 max CTD pressure 3302 at 28-Oct-2003 07:11:59
 max LADCP depth 3236 at 28-Oct-2003 07:11:56
 Changed Start Time : 28-Oct-2003 06:04:58  to 28-Oct-2003 06:15:24
 Changed End   Time : 28-Oct-2003 08:48:47  to 28-Oct-2003 08:40:21
 CTD max depth : 3257
 best lag : 1 pings ~ 1 seconds  corr:0.98779
 adjust ADCP time to CTD time and shift depth record 
 adjust start/end position
GETDPTHI: Depth from vertical velocity inverse method
 starting run 1 to LADCP depth
 take soundspeed from CTD profile 
 correct velocities for sound speed 
 maximum depth from int W is :3257.2587
 should be                   :3257.2587
  bottom found at 3260 +/- 6 m
 removing 402 values below bottom
==> get depth took 400 seconds
PREPINV: prepare data for inversion, form Super-Ensembles
 average profiles over (p.avdz) 16 meter
 discarded 0 bottom tracks velocities because of dist > 300
 reduce weight for larger tilts 0.5 at 10 degree
 will not correct for sound speed twice
 remove reference velocity and average ensembles 
 Outlier discarded 409 bins down looking
 reduced ensemble size is 357
LOADSADCP: load SADCP data file ../sadcp/A22_sadcp.mat
 found 10 SADCP profiles 
==> prep inversion took 29 seconds
GETINV:  compute best velocity profile
 Barotropic velocity error 0.0068989 [m/s]
 super ensemble velocity error 0.0095951 [m/s]
 set velocity error to:0.017799 [m/s]
 vertical resolution (ps.dz) is 10 [m]
 preaveraged GPS ships vel 1 times 
 smooth Ocean velocity profile
 found 9 ill constrained elements
 smooth CTD velocity profile
 found 4 ill constrained elements
 bottom inversion 
 mean bottom track weight : 0.81285
 weight for bottom track is (ps.botfac) 1
 mean sadcp weight : 0.58861
 weight for SADCP vel is (ps.sadcpfac) 1
 add barotropic constrain weight: 2.58
 weight for drag is (ps.dragfac) 0.18517
 ready for inversion  length of d : 4663
           (CTD vel)  length of A1:357
         (ocean vel)  length of A2:325
Moore-Penrose inverse
 solve only down trace
 smooth Ocean velocity profile
 found 12 ill constrained elements
 smooth CTD velocity profile
 found 2 ill constrained elements
Cholesky transform
 solve only up trace
 smooth Ocean velocity profile
 found 11 ill constrained elements
 smooth CTD velocity profile
Cholesky transform
==> inversion took 30 seconds
GETSHEAR2: average shear profile over (ps.dz) 10 [m]
 maximum std (stdf) 2 of data 
 minimum weight  0.1 of data 
 will use 95 % of data 
 compute vertical diffusivity
 use dz:640 m long segments
 save results